mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CTTCACTGTTTTTGCCATGTT CGTGGTGCGACGGTACGCG TGCCAAGCAGTTGCTCGTCTGCTTCACTGTTTTTGCCATGTTTGTGTTGCTGTCCACTGCATTTGCTTGTTACATTTGCGTGGTGCGACGGTACGCGGAACGCATGCGAACAAAA CATTTCTGTTCAGGATGCCATTGGCAATAAAGCAATTGTTTACCGAAATATTCATCTTTTGGACGACAAATTTCGCTTACGTTTTCGCTTTAATGAATCGCTTCATACAATTGGAGCCAATCTGACAACATTTATTGGAAAGCTTGAAAAACGACTTCAAGGCGATTACAGGATTATGCCATCATTACCAATACGAGACGAGGAAAATCCGGGACAAAATTTCGTCATGTGTTTCCATTTGTGGTCACCAACAAATAATGGTAGTGGTGATGCAATTGTTGAATTTGCGGAAAGTGAACGGTTATTGTCCACAAATGTACAAAATTCGAAAGCCAATGAACAATTGCATAGCTTATACTCAGAATACAAAGTGATCAACATTGAGTCATGTGCTGCTGCTGATTCGTCGACATCATCGGTACTGCTCAATTCCGATTCTTTTGGCTCGTCGATGGTGCAGCCAAATGCCAAGCAGTTGCTCGTCTGCTTCACTGTTTTTGCCATGTTTGTGTTGCTGTCCACTGCATTTGCTTGTTACATTTGCGTGGTGCGACGGTACGCGGAACGCATGCGAACAAAATGCGACCATTTGCTGGACGAGCAGCGGAGCGCTTCATACAACTCCACCGACAATCCGTATAGTGTTTATGCGAAAAGCAACAATA 4 2 5' arm Heterodera_glycines mirnest 100 100 -34.4 ......(((..(((...(((((...((((((..((((((((..((((.((........((....))..)).))))..)))))))).))))))..)))))..))))))........ (-34.4)