mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CGGAGAGGAGGCTGGAGGCGG GCCTCCACCCTCTACTCCACT CCGATATACTACCGCCTCCACCCTCTACTCCACTGCCAGTCTACACAAAATCCTCTTCGCCTCCAAAATTGACCAAGCTACAGGAGCTCCAACAAAAGAAAGAGGCCTATCTGAGGGCCAGGGAGCACGAACGGGAAATGGAGCAGCTGCAGCGTACGGAGAGGAGGCTGGAGGCGGGAAAGGTCAG CGCGCCAAGGTGATTACATAAATCTAAAAAACCATGCAGAAGGCCATCAAGAAGGAGCTCAGCTTCTCGCTGGACACGCTGGAGCGCTACCGGGCCAAATACGGACGCAGTGCGTCCTCGGACACGAACGGGGCTAGCACTATTCAAAGTTTGCCGGCTCCCGGTGCCGATATACTACCGCCTCCACCCTCTACTCCACTGCCAGTCTACACAAAATCCTCTTCGCCTCCAAAATTGACCAAGCTACAGGAGCTCCAACAAAAGAAAGAGGCCTATCTGAGGGCCAGGGAGCACGAACGGGAAATGGAGCAGCTGCAGCGTACGGAGAGGAGGCTGGAGGCGGGAAAGGTCAGGACAGCCAGTCCCACGAAGACCTCTCCCACTCCAAGAACTGGGTCCCCGACCTCGACCTCGGCGACAACTGCCGCCACCAAATCCCCCAGCACAGCTGGCTACTCTAACTGGTCCAGCCAGCATTCGACACTCTGCTCCCAGCCTTGGGTGGCCATTTCGGAACTGATGTACTTCTGCGACAAGTACGAGTTCACCACGTTGAGTACTCGAGATCTAAAGACACACCAAGAGATCGTGGCCGAGGTAAGGGCATTGCTCTCGGGGAAGGCACCTTTTGATCAGCGCACCCGCTTTCCCGGCAACATCCACGACCCCGAGAACCTGTGGGTGTGCATCGGGCGCTGCGCCAGTGTGGAGTACATCTCCAGCGCATCATAGTATCTTCGGAAGCCCTCATCAGTGACTCAG 3 0 3' arm Drosophila_ananassae mirnest 100 100 -59.6 ..(((......(((((((((.(((((.((((.((((.(((((...((...((((.((((.((((....(((....((((.....))))....)))........(((((......)))))..))))..)))).))))..)).))..))))))).....)))).))))).))))))))).....))).. (-59.6)