mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CCTCCGTCTCAAAATAAGTGT ACATTTATTTTGAGGCGGAGCGA ACAGTNTGCTCCCTCCGTCTCAAAATAAGTGTCTNAGCTTTATACTAGNTTTAGTATAAAGNTATACTAAGCTTGAAACATTTATTTTGAGGCGGAGCGAGTATTAAT AACTGGGGATAGTACTCTAGGTTTTGGCTTTGCCGGCACCGGCAAATAATGTACTCCGCCACTTACAGTNTGCTCCCTCCGTCTCAAAATAAGTGTCTNAGCTTTATACTAGNTTTAGTATAAAGNTATACTAAGCTTGAAACATTTATTTTGAGGCGGAGCGAGTATTAATCATGCACAGAAAATAAATTACATAGAGAGATAGCTATATTATATACACCACCGGACAAACTTCAGGCGACGGTCTACCCAATACTTGTGATTCCGTTTTTCTCCCCCCTTCTTCCAGCTGCCATCATTTTCCCCAGCACCTTGTTTCATTCACAAGCAATCTTGGTATCAAAACTGCTTAGACATATTGCAAATGATTGAAATGCTGATATCGGNTAGCCGGTAGTCCATGGTGAACAAGTCTTTGCCTATCTTTCCAAACTGGAGAATCACCTTGTCATGCTCCTGGCTAACTGGTCCATTGTCATCTGAAGCCACCAGCTGAAAGTTCTTCACTGACGCAACCCGTCACCCGCCCACGGAAATTGAGGCACCAACATTGCAGTTGTTCATGCCACCGAGGAGACTTGTTCTTCAGCACCAGCTTC 1 2 5' arm Hordeum_vulgare mirnest MIR1122 4e-16 osa-MIR812k 0.0003 -39.3 .......((((.(((((((((((((((((((((..((((((((((((....)))))))..........))))).))..))))))))))))))))))).))))...... (-39.3)