mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AGGTCCTCAATGAGTATTTTT AGAAGCCAAAGAGGAACTTG ACAGGCTACAGAGGTCCTCAATGAGTATTTTTACTCCCACTTGTCTAACCCATATCCCAGTGAAGAAGCCAAAGAGGAACTTGCCAAACAG CCCGCAAATTCAGTTCGATCCAGACCCAGCTGAAGCAGAGCACCTGTGAGGCGGTCATGATACTGAGGTCCCGCTTTCTAGATGCCAGACGCAAGAGGCGCAACTTCAGCAAACAGGCTACAGAGGTCCTCAATGAGTATTTTTACTCCCACTTGTCTAACCCATATCCCAGTGAAGAAGCCAAAGAGGAACTTGCCAAACAGTGTGGTATCACCGTCTCTCAGGTCTCCAACTGGTTTGGCAACAAGAGAATCCGCTACAAGAAAAACATTGGCATGATGACCACCCAGCGAGTCGCCACTCAGACCATGGGCCCCCGACCAGCCACTGCAGCTGCCGCAGCAGCCACCCCCGTGCGTGGAGTACCTCAGTACAAGTATGCAGCAGGAGTTCGCAATACCCAACAGCACATGAACACTCAGCCACAAGTTAACATGCAGCAGCCTGCAGTCCACGTCCAGGGACAGGAGCCTCTGACTGCCTCCATGCTGGCTGCTGCTCCTCCTCAGGAGCAGAAGCAGATGCTGGGTGAGCGTCTGTTTCCACTGATCCAGAACATGCACCCCAGCCTGGCAGGCAAGATCACAGGCATGCTGCTGGAGATCGACAACTCAGAGCTGCTCCACATGCTGGAGT 4 1 5' arm Paralabidochromis_chilotes mirnest 100 100 -17.6 ...(((...((...(((((..((.((.((((((((.......................)))))))).))))..))))).)).)))...... (-17.6)