mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCCTCTTCTCCTGCCTCCCAT AGACAGGAGAAGAGGAGA CTAGAACATTGCAAACAGGGACAGACAGGAGAAGAGGAGAGGTATTGTCTGCTGGGGGACTCTGGTCTCTTTTCCGCAGCAGGGTGCTAGAAGAACTTACCTGGTCCTCTTCTCCTGCCTCCCATCCTCTGCCGGCCTCCACAT GTCTCCTTGTTTGCACTGTTTCTAATCTGACTGTTGGGTGAAGGATGATTTGTGGAAAGAATGAGGGAGAGAAAGATAGACTAGAACATTGCAAACAGGGACAGACAGGAGAAGAGGAGAGGTATTGTCTGCTGGGGGACTCTGGTCTCTTTTCCGCAGCAGGGTGCTAGAAGAACTTACCTGGTCCTCTTCTCCTGCCTCCCATCCTCTGCCGGCCTCCACATGTAGAAATAAGAGTGTCAGTCTCTGCTCATGAAGGTAGAGGATGGACTTTCTGTCTCTGCGTGTGTTTGCATGAGTGCCAGCTCTGATCACCACAGCAAATTGTATACAATCCATACAATCCATTGATTTATGATTACCATATTAATCACTGCTGTCATTTGTCATGTGAGGTCTTTTTTTTTCTTCCAAATAAGTTTCATGCACAGGATTTTGTTTCTTTAATACTGTGGATGACATGGAGATGGGGGGATGAATCACGACATTTATAGAAATATTTTTTTCTACTGAAATGTGATGCTACTGACTCGTTTTGGCACCAAAGTTTGATCCTATGTAGATGCTCTTTTCCTAACTGACAAGCGTTAAACCTCACCTGTTTTGTGTGGTGTTCAAATTGGTTTCATCTAATTATTTAAAGCCAAAGCTTTAGAGCTCAATGATGGTGTCAGATACTTTTTTAGTAGTGGCTCATTGTTTAACATAGGACCTTTCTATGACAAAGGTCCATCGCAGTTTGTAATGGTCTCTAAAACCAAAAGTTCTCAACAG 5 0 3' arm Hippoglossus_hippoglossus mirnest 100 100 -44.5 ..........((...((((((.((.(((((((((((((.(((((.((.((((.(((((((....)))))))....)))))).(((.((...)).))))))))..))))))))))))).))....))).)))...))........ (-44.5)