mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GTGTGCGGAAACGCTTCTGCT CAGAATCCTTTCTGCACAAAC ATGCCCCCTCCCATCAGTCGAACAGAATCCTTTCTGCACAAACTAGGATGCTTTGTCACTCAGTGTGCGGAAACGCTTCTGCTCCACTGGTGGGGGTTCACC CATCACACACTTCTCTGCAACAACAGGTGTTTGAAGAAAAAAAGATTTCAAAATGAGTGGATTCTTCCAAATGTTGAGAAAGAAAAAGGAGCTGATCCCTCTGATTGGGTTCATGGCGTTTGCTGCAGCAGGAGCCACCTCGGCTGCGCTCTACTTTCTCTTCACTAAGAATGATGTCATTTTGAATAAGACCAATAACCCAGAGCCATGGGAGAGAGTGGACCCATCAAAACCCCAGAAGTTCATCACCATCAATCAGAAGTGGAGGCCGGTGGAGGAGCTGGAGCTGGTGAAGAAACTCACCAAGTAAAAGAAAAGGCAGACGTCTGCCAGGAAGATCCACCAGTCCGCCGAGCTGCCGACAAGCCGACATGCCCCCTCCCATCAGTCGAACAGAATCCTTTCTGCACAAACTAGGATGCTTTGTCACTCAGTGTGCGGAAACGCTTCTGCTCCACTGGTGGGGGTTCACCCCTGCTAAGCCCAAGGACGCCCATCCACACCCATCCACAGCAGCAGGAAACGATGGGAACAGATCCTCATAGTGTCATTAAGTCAAAGTGGAATAAAGACACCATCTCACTGTGGGCTTCTGTGTTTTTTTCACAACTAGACGATTAATATTGAAGAAGCTGCGTTTCATTGGTCGTCCGGTTGATGAATCACACAGAAGCCACAGATGTTAGAGTAGATCTCAAATGTATGATGGTGTGTTATGTGACGATCAAC 5 0 3' arm Hippoglossus_hippoglossus mirnest mir-147 4e-25 gga-mir-147-1 0.0003 -38.6 .......(((((((((((.((.(((((...((((((((((......(((.....)))......))))))))))...))))).)).)))))))))))...... (-38.6)