mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CGGGGGTGGGGGGGGGGGGGG CCGCCCCCCAACCAACGAG CCAAATTGGGGGAGGGCGCCCCCCGCCCCCCAACCAACGAGCGCCGGGGGTGGGGGGGGGGGGGGGGCGCCCCCTATCTTCTTA ACCCAAATTGGGGGAGGGCGCCCCCCGCCCCCCAACCAACGAGCGCCGGGGGTGGGGGGGGGGGGGGGGCGCCCCCTATCTTCTTATAACATATATTAAAAAATTTTATCAATCGGCGGCACCGGACTTTGGCCGGGGAATTCCGCCATTGGGGGCGGGGGGGGGGGCGAATAATCACAAAATTGAATGTCATAAGAAGGGGCCCTCTATTATTAGAGGAGAAGCACGGGCCACACCCCCCGGAAAATTTTTCCCATCGTGTACCTCTTTGAAAAACCAAAAAAATTTTATTCTTATTTAACAGTGTAACAACACGAAGTTGATACAATATTCTGCTGCTCATTGTCATTCTCCTGAGCTACCAAGCGGAGGAGATTGTTACGAACACCCCAATGATTTTAATAAAAGGAGAACCTGGGGTAAAAAAAACCAGGTTGTTGATAAGCGGCGGGCTCAATGAACTCCATGGTTGCTGTGGATTGCAGACGGCCTCCACTTTCTATGAAATAAACTATCTGAGACAGTCAAGACCATCATGCTAACCATCAGGGAATAGCTGCTTGCTGGCGCGTTATTCTTCCCCCCCTCAAAGTAGTGAAGAGATGCGCGGAGATCTGTCTTTTCTAAGAACGACACTTATATCTATACTCTCTAAAAAAGCACCAGCTGTGATTAGTGAGCTGCAACTATTTCCTCCGGTCTTTTTACTGAGCCGGGGTGCTACGAACTCTATATGAGATAGCTCTCTCCGTTATCTCAGACACACGAAAAAGAGATTATGCAATACGACTCCATTATAGCCAAGACGACAGTGCTGCCCGTACTGCATGGTCCTCTACTGTCCGTACGAATAATATTCGACGAACTATGCAGACCCCACAGCAAGAAAATAGAAAAGAGGCCGCCCAGACGAGGGTTGTCATAAAATGTTCGTCTGGCAGCCGCACAGGCTACCCTCAGTGCTAATGGATACTGT 4 2 3' arm Peregrinus_maidis mirnest 100 100 -52.2 (((...)))(((.(((((((((((.((((((.(((..((.....))..)))...)))))).))))))))))))))......... (-52.2)