mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GCGGGAAAAAAAGGTGGGGGA CCCCCCTTTTTATTTTGTGG TAAAGGCCCCCGCGGGAAAAAAAGGTGGGGGAACCCCCCCCACAAAAAAAAATAACCTCTGGGGGGGGGGCCCCCCCTTTTTATTTTGTGGGGGACACC TNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTTTTTTTTTTTTTCCCCCCCCAAATACCCCTTTTTTTTCCAGGTTTTAAAAAAAACCCCAATTTTTTTCAGGGGGTTTTTTGGGAAAAATTTCTCTTTTTAAAATTTCCCCCCCCTCCGGGGAAAAAAAAAAAACCCGGGCCCGGGAAAAAAAACACAAAAAAGGGTTCCCCCCCCCCCCCCCCCGGGGGGGTTGTTTCCCCAAAAAAAAATCCCCCCCAAAAAAACCTTTTTGGGGTTTGGGGGGCCCAAAAAAAAAATCTCGGGGGGTTTTTTTATTTTTTCAAAACCCCAAAAGGGGGGAAAGGGGGCCCATTTTTGGAGAGAACCCCCCCCCCCTTTTTCCGGATTTTAAAAACCCCCAAAGGGCGGGCCTGGGTTTTCCCCCTTTTGGGTTTTTAGGGGGTTTCAAGGAGAACCCCCCCTAAAGGAAACCCGGCCCCTTTTTTTTCCCCCCCCTTCCCCCAGGGGCCCCGCGCCACCCCTGGTTTTTAAACCCCCTTTTAAAAACCGGGGGGGGTGTCCCCTTTTTTAGAGTACTTTCAAACCCCCCCCAATTTTTTTGAAAAAATTCACCCCCTCCCTTTTTGGAAACCCCCTAAATTATAAAAATAAAAAAGCGCCCAAAAATTTGTGACCCCCGGTTTTTCCCCCAAAAAACAAACTTTCTCTTTTAAAGGCCCCCGCGGGAAAAAAAGGTGGGGGAACCCCCCCCACAAAAAAAAATAACCTCTGGGGGGGGGGCCCCCCCTTTTTATTTTGTGGGGGACACCTGTTGTTAATAATAAAAGCAAGAGGCGGGGGGGTTTTTTCCCGTGGGGGGGC 2 1 5' arm Ambystoma_tigrinum_tigrinum mirnest 100 100 -54.7 ......(((((((((((.(((((((.(((((..(((((((((.................)))))))))..)))))))))))).)))))))))))..... (-54.7)