mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GGGGGTTGGGGGGGGGGGGGG CCCCCCTCCCTTTTTTTTGTG AAAAACCCACCCTCCCCACCTGGGGGTTGGGGGGGGGGGGGGGGGGGGGGGTGTGTTCTTCCTTATAAAAAAAAAAAAACCCACCCCCCCCCCCCTCCCTTTTTTTTGTGGTGGGGGGGGGGGCGGGG CCNGGGGGGGGGGGCCCCTTTTTTTTAAAAAAAAAGTTTTTTTTTTGTGGGGGGGGGGGGGGGGGGGAAAAAAATAAATTTTATTTTTTCCCCCCGGGGGGGGAAGAAATTTTAATTTTTTTTCTTGGGGGGGAAAATTGTGTGGAAAAAAAAAACCCCCCCCCCCTTTTATAAAAAAAAATCCCCCCCNNCCTCTTTTTTTTTTGGGGGGGGGGGGGGGGAGAGAAAAAAAACAAAAAATATTCTTTGCCTGGGTGGGGGGGGGGGGGGGGGGGACCCCCCCCCTCTTTTTTTTTTTTATAAAAAAAAAAACCCACCCTCCCCACCTGGGGGTTGGGGGGGGGGGGGGGGGGGGGGGTGTGTTCTTCCTTATAAAAAAAAAAAAACCCACCCCCCCCCCCCTCCCTTTTTTTTGTGGTGGGGGGGGGGGCGGGGGGGGGGAAAAAAAAAAAAAAAAAACCCACCCTCCCCTTCCTTCTTTATTTATTTTTTTTTTTTTTTGTGTGAA 3 0 5' arm Ambystoma_tigrinum_tigrinum mirnest 100 100 -76.4 .....(((.(((((((((((..((((..((((((((((((((((((..((((..........................)))).))))))))))))))))))..))))..))))))))))))))..... (-76.4)