mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CGTTGTGTTTGCCATTCTGCA TCTGTGCAAAGCACGATACT TGCCACTCTCTACTTCGCTCTGTCTGTGCAAAGCACGATACTTACCGTTGTGTTTGCCATTCTGCAAATAGCGGCACTCGTTTGG GCACGAGGCCTCGTGCCGATAAAGTTTTAGTTTTTCTTTAATTTTGTGTAAATTCATACAAAATGTCTTCGTCATCTCTGAATTCACAGCTTCAAGATTATCTTTCAAAAAATACGAAATCATCATCTAGTGGCAATGGTTCACATTCAGTATTCGGCGGATTTTCGTTATTTGGACAAAAAGACTCATCGAACGGTAGTCAAATGATGGACGATGCCGATAATGCGTGGATGGCGAGCGCCCAGAACGATCCTCTGCTGCCCAGTTTGACTAAGAAGCAGAGAGTCCTTGGTTTTGTTGGCTGTCTTCTTATGGGAACGTTCTGCATATCGCTTGCCTCGTTATACGTTCCATTCCTAATTCTTAAGGCAAGGAAGTTTGCCATGTTGTATTCGTTGGGGAGCTTCTTCATTATAGCGAGTTTCTCGCTGCTCTGGGGTCCGGTCAACCACGTCAAACACCTGCTGTCAATGGAGAGACTGCCGTTCACAACCGCCTACTTCGGAACAATGTTTGCCACTCTCTACTTCGCTCTGTCTGTGCAAAGCACGATACTTACCGTTGTGTTTGCCATTCTGCAAATAGCGGCACTCGTTTGGTTCGTCGTCAGCTACGTTCCTGGTGGACAAACCGGTCTTAAATCTTCTC 5 1 3' arm Lumbricus_rubellus mirnest 100 100 -15.8 .((.............))...(((.((((...))))))).....((((..(((((((......)))))))))))........... (-15.8)