mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GGTGGGGGGGGGGGTGGGCAT GTATCTTCCTCTCCTGCCAG AAGCAGCCATGGGTGGGGGGGGGGGTGGGCATCCTCCTGTGAAGGACTGTGCCCTCTCAGGTCAGACCTGTGTCCCCCTCTTTGCAACAGGTTTCACAAGGCAAGGATGTATCTTCCTCTCCTGCCAGATGCTCTT CGTCCGGTTGGCGGGGGGAGAGGGACACACCCTTAAGGGGTTGTTCACTGCCCCAGCACTACCCGTGTCAGGGAAAGTCCCCTCAAGATAAGCCTTCCCCAGCACATTGATCTGTAGTGTGAAAAGCAGCCATGGGTGGGGGGGGGGGTGGGCATCCTCCTGTGAAGGACTGTGCCCTCTCAGGTCAGACCTGTGTCCCCCTCTTTGCAACAGGTTTCACAAGGCAAGGATGTATCTTCCTCTCCTGCCAGATGCTCTTGCCAGACTAGAGACAAGTGTTTGACCCTGGCAGATCAGAGAAATTAAGGCCCTCAACTGCAGTGTGACAGGGAAAGTGTCGGGGACATGGCCTTGTCTGTCCTTCTTTGCCCTGCCCTTGCCTAACCCCCAGAGGCCATTAAGATGGAGCCATTCAACCTGGATTGGATCTGAATGGCACACTTATGTCCTCTACACTGGGGGCTCTCCCAGGGCAGGGGCTGTGTTCCCTTTTTCTGGAAGGAAGGTACCAAAAGGGCCCATAAAAGCTGAACAGGCCGCAGAGTGTTTGGGTCCCTGCCTTGCTCAGTTGTCTGTCTCCCCTAGACTACTTGTGCTCCCCTGAGGAGAATATCTACAAGATCGACTTTGTCAGGTTCAAGATCCGGGACATGGACTCAGGCACTGTCCTCTTTGAAATCAAGAAGCCCCCTGCC 2 1 5' arm Cavia_porcellus mirnest 100 100 -52.5 .((((......((((((((((((((...((((((((((....))))...((((.......((.((((((((...............)))))))).))..)))).))))))..))))))))))))))...))))... (-52.5)