mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CGCGCCGGGTCCGGGTCTTCC AAGACCCACTCCCCGGCGCCGCT GGCGTACGGAAGACCCACTCCCCGGCGCCGCTCGTGGGGGGGCCCAAGTCCTTCTGATCGAGGCCCAGCCCGTGGACGGTGTGAGGCCGGTAACAGGACCCCGGCGCGCCGGGTCCGGGTCTTCCCGGAGT ATTCCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGGAAAAGAAACTAACAAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCGCCGAATCCCCGCCCCGCGGTGGGGCGCGGGAAATGTGGCGTACGGAAGACCCACTCCCCGGCGCCGCTCGTGGGGGGGCCCAAGTCCTTCTGATCGAGGCCCAGCCCGTGGACGGTGTGAGGCCGGTAACAGGACCCCGGCGCGCCGGGTCCGGGTCTTCCCGGAGTCG 3 2 3' arm Cavia_porcellus mirnest SSU_rRNA_eukarya 3e-39 mmu-mir-5105 1e-19 -56.8 .......(((((((((....((((((((.(((...(((((((((...(((.....)))...)))))..((.((...((((.....))))...)).)).)))))))))))))))...)))))))))...... (-56.8)