mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CGCGCCGGGTCCGGGTCTTCC AAGACCCACTCCCCGGCGCCGCT GGCGTACGGAAGACCCACTCCCCGGCGCCGCTCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCCAGCCCGTGGACGGAGTGAGGCCGGTAGCGGCCCCACGGCGCGCCGGGTCCGGGTCTTCCCGGAGT ATTCAGCATATTAGTCAGCGGAGGAAAGAAACTACAAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCGCCGAATCCCCGCCCCGCGGTGGGGCGCGGGAAATGTGGCGTACGGAAGACCCACTCCCCGGCGCCGCTCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCCAGCCCGTGGACGGAGTGAGGCCGGTAGCGGCCCCACGGCGCGCCGGGTCCGGGTCTTCCCGGAGTCG 3 2 3' arm Cavia_porcellus mirnest SSU_rRNA_eukarya 1e-56 mmu-mir-5105 9e-33 -62.2 .......(((((((((....((((((((.((.(((((((((((((..(((.(((...((.(((...))))).))).))).)).))))........)))))))))))))))))...)))))))))...... (-62.2)