mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GTGGGCTGGGGGCGGGGGAGG TCCTCACCCCCCCTTCCACTC CGCGCGTGTGGGTGGGCTGGGGGCGGGGGAGGGGAGAGGAGAGACGAAACCGCTTTGAAAAAATGCAGTGATTCCATTCCTCTGTGTTGCCCACCTCCTCACCCCCCCTTCCACTCTGCCTCCT ATGGGCTGGATTTAGTAGGACAACTCGATTACTAATGACTCCGCGGCTTGGCTGCGACCTGCCGGGAAATCAGGTGCAAGCATGTGTGTTCCGGAACGCGCGTGTGGGTGGGCTGGGGGCGGGGGAGGGGAGAGGAGAGACGAAACCGCTTTGAAAAAATGCAGTGATTCCATTCCTCTGTGTTGCCCACCTCCTCACCCCCCCTTCCACTCTGCCTCCTTGCTTTGCCATTTTAATCGGGCTTCCTTGTTTCTTTCTTCCCCGCATCCTGTTTTCTCCCCCTGCCCCGCACTCAAGGTTTGCCTGTAGGTACCTGAGCTGACACCGAAGGTGCCTAAAGATGCTGAGCGGCGTTTGGTTCCTCAGTGTGTTAACCGTGGCCGGGATTTTACAGACGGAGAGTCGAAAAACTGCCAAAGACATTTGCAAGATCCGGTGCCTGTGCGAGGAGAAGGAGAACGTACTGAATATTAACTGTGAAAACAAAGGATTTACAACTGTCAGCCTGCTTCAGCCTCCCCAGTATCGAATTTACCAGCTTTTTCTCAATGGCAACCTCCTGACGAGACTGTATCCAAACGAATTTGTCAATTACTCCAACGCGGTGACCCTTCACCTAGGTAACAACGGGCTGCAGGAGATCGGAACTGGGGCTTTCAGTGGCCT 4 0 5' arm Cavia_porcellus mirnest 100 100 -44.7 ...((....(((((((..(((((..((((((((((((((((.......((.(((((....))).)).)).......))))))).......)).)))))))..)))))..))))))).))..... (-44.7)