mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GCCGGCGGGAGCCCCGGGGAC CTCCGGTGAGCTCTCGCTGGCCC AACGCGACCGATCCCGGAAAAGCCGGCGGGAGCCCCGGGGACAGTTCTCTTTTCTTTGTGAAGGGCAAGTCGCCCTGCAATGGATTCGCCCCCAGAGAGGGGCCCGTGCCTTGGAAAGCGTCGCGGTTCCGGAGGCCTCCGGTGAGCTCTCGCTGGCCCTTGAAAATCCGGAGGACA GTGCGATAACGCGACCGATCCCGGAAAAGCCGGCGGGAGCCCCGGGGACAGTTCTCTTTTCTTTGTGAAGGGCAAGTCGCCCTGCAATGGATTCGCCCCCAGAGAGGGGCCCGTGCCTTGGAAAGCGTCGCGGTTCCGGAGGCCTCCGGTGAGCTCTCGCTGGCCCTTGAAAATCCGGAGGACAGGGTGTAAATCTCGCGCCGGGCCGTACCCATATCCGCAGGAGGTCTCCCAGGTGAATGGCCTCTGGCATGTTGGAACGATGTACGTAAAGGAAGTCGGCAAGCCTTATCCGTAACTTCGGGATAAAGATTGGCTCTAAGGGCTGGGTCGCTCGGACTGGGGCTCGAAGCGAGGCTGGG 3 2 5' arm Cavia_porcellus mirnest 100 bta-mir-2889 0.0001 -65.9 .......((....(((((...((((((((((((.((((((..(((((........((((..(((((.....))))))))).))))).(((((......)))))....(((((((((.((...))..)))).)))))))))))...)))))))))))).........))))).))... (-65.9)