mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GCGGGCCGGGCGGGCGGCCGA AGCGCTCGCCCTCCCCCACA GGAAGGGTTTTTAGCGCTCGCCCTCCCCCACAGCGTAGCGGCGCGCGAGCGGGCCGGGCGGGCGGCCGAGTTTTCCGA CATTTCCTTAAGGAAGGGTTTTTAGCGCTCGCCCTCCCCCACAGCGTAGCGGCGCGCGAGCGGGCCGGGCGGGCGGCCGAGTTTTCCGAGAGATAAGTTGATCAAGATGTCCAGTGATAGGCAAAGGTCCGATGATGAGAGCCCCAGCACCAGCAGTGGCAGTTCAGATGCGGACCAGCGAGACCCAGCCGCTCCAGAGCCTGAAGAGCAAGAAGAAAGGAAACCTGCCACCCAGCAGAAGAAAAACACCAAACTCTCTAGCAAAACCACTGCTAAGTTATCCACTAGTGCTAAAAGAATTCAGAAGGAGCTAGCTGAAATAACCCTCGATCCTCCTCCTAACTGCAGTGCTGGGCCTAAAGGAGATAACATTTATGAATGGAGATCAACTATACTTGGTCCACCAGGTTCTGTATATGAAGGTGGTGTGTTTTTTCTGGATATCACATTTTCATCAGATTATCCATTTAAGCCACCAAAGGTTACTTTTCGTACCAGAATCTATCACTGCAACATCAACAGTCAGGGAGTCATCTGTCTGGATATCCTTAAAGACAACTGGAGTCCTGCTTTGACTATTTCAAAGGTTTTGCTGTCTATTTGTTCCCTTTTGACAGACTGCAACCCTGCGGATCCTCTGGTTGGAAGCATAGCCACTCAGTATTTGACCAACAGAGCAGAACATGACAGGATAGCCAGACAGTGGACCAAGAGATACGCAACATAACTCACACGATGTGTATGCAGTGTGAAGGGGC 5 1 3' arm Cavia_porcellus mirnest 100 100 -32.6 (((((....(((.((((((((((..(((....((((......))))....)))..)))))))).)).))).))))).. (-32.6)