mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GGCGCCGGGCCCGGGCTGGGG CTGGCCCGGGTCACCGCCCC CCAGCGAGTGCGGCGCCGGGCCCGGGCTGGGGTACACCGTGAACGTGGCCTGGCCCGGGTCACCGCCCCTGGCCGAT GCTCAGGAANNGTTTCGCGATAGTTCGTCCTCCGGGTCACCACGCCGAGCCCAACCAGGCGATGGGCTTCTGCTTTTTCAACAACGTGGCAATCGCCGCCCGCATCTTGCACACGCGGCTCGGCCTCCAAAGGATACTCATAGTGGACTGGGACGTCCATCACGGTAACGGCACGCAGCAGATCTTCTACGAGGACCCTCACGTGCTGTATATCTCCCTCCACCGACACGACGACGGCAACTTCTTCCCGGGCACGGGTGCGGCCAGCGAGTGCGGCGCCGGGCCCGGGCTGGGGTACACCGTGAACGTGGCCTGGCCCGGGTCACCGCCCCTGGCCGATGCGGAGTACTTGGCCGCCTTCCGCACCGTCGTGATGCCCATCGCCAAGGAGTACGACCCCGAACTGGTGCTCGTGTCGTGCGGCTTCGAT 3 1 5' arm Danaus_plexippus mirnest 100 100 -36 ...((.((...((((...(((((((((((((.(((.........))).)))))))))))))..)))).)).)).... (-36)