mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AGACTTCTCTTTTGAAGGTGA AGTGTCAGGAGAAGAGTCTAA AGGTCCCATTTCAGTGTCAGGAGAAGAGTCTAACGCACACCAGTGCAGAGGAGATCATGAGGAAAATCAAACAAGGAGACTTCTCTTTTGAAGGTGAAGCCTGGAG GAGCTGCTGGAGAGGATCAGAAGGAAGCAGCACTTCAGCGAGACGGAGGCCAGTCGTATCATGCGCAGACTGGTGTCTGCCGTCAGCCACATGCATGATGTTGGCGTGGTGCACAGGGACCTCAAACCAGAGAATTTGCTCTTTACCGACGACACTGAGAATTCAGAGATAAAAGTTATTGACTATGGCTTTGCACGGCTCAAACCCCCCGACAATCAGCTCCTGAAGACTCCCTGCTTCACTCTTCAGTACGCCGCACCAGAAATCCTGAAATACGATGGTTACGATGAGTCCTGTGACCTCTGGAGTTTAGGAGTCATTTTGTACACCATGCTATCTGGCCAGGTCCCATTTCAGTGTCAGGAGAAGAGTCTAACGCACACCAGTGCAGAGGAGATCATGAGGAAAATCAAACAAGGAGACTTCTCTTTTGAAGGTGAAGCCTGGAGGAATGTGTCCAACCAGGCCAAGGATCTGATACAAGAGCTGCTGACGGTGGACCCTAACAAGCGGATAAAGATGTGCGGCCTACGCTATAATGCCTGGCTGCAGGACGACAGCCAGCTCTCCTCCAACCCTCTTATGACCCCTGACATCCTGGGATCTTCTACCAGATCAGTGCACTCTTGTTTCAAAGCCACCTTCAATGCCTTTAATAAGTGTAAGCGGGAGGGATTCCGACTTCAGACGGTTGACAAGGCTCCTTTGGCCAAACGCAGGAAGATGAAGAAGACCAGCACCAGCACAGAGACCCGCAGCAGCTCTAGCGAGAGCACGCACTCCTCTTCCTCTTCCTCCCAGTCTCAGGATAAGACGCCACTGAGCGGAGAGACGGCCATCATTCCCCAGGCCTCCGTGAGCACGCCTTTCACTCTGGGCCCTG 4 0 3' arm Rutilus_rutilus mirnest 100 100 -24.7 ...(((..(((((...((((((((.((((((...((((....)))).((.....)).(((......))).......)))))).))))))))...)))))...))). (-24.7)