mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GGGGGAGGGAGAGTGGTGTGG TATCCATCTTTTCCTTCCTTCC ATGAAGCACCCAGCAGGGATCTATTTTAAACCTATCCATCTTTTCCTTCCTTCCCCTCGGTGGGGGAGGGAGAGTGGTGTGGGAGGATTCAGGAACCCCTGTAAGGTATCC CATCATCATTTTTCGAGCGAAGGATACGTTTCACTATTGTGTTGTAAAATGTGATTATTCATCATCCTCGCACGACACGCCCGGAAAGGATGATGAAGCACCCAGCAGGGATCTATTTTAAACCTATCCATCTTTTCCTTCCTTCCCCTCGGTGGGGGAGGGAGAGTGGTGTGGGAGGATTCAGGAACCCCTGTAAGGTATCCGGTGACCTTTACCTTCCCCGGTGCGGGGAGTTGTAAACAAAACACCCAAAACAAATCGAAAGGTTCACAGCAGCGACGACCAATCAAGCGTCACCAGATGTTGTGAGACCACCACCCATCCCCGTATAATGCTGCCCCGTTCAATAATTCCAAAATTCAATTTCAGTTTACCCATCATCGACGCCGCATGTAAATAAAACTTCGGGCGGGTGATTACGGACATAAATACTGATTTGGGAAGCGAATCTCGAACCAACCCCCCCCCCCCCGTTCGCTTTCCTGGAACTCCGGAAACGGCAAGACAGAAGTCACCCACTACCGGGCACGTAGTTCCCACAGA 3 1 3' arm Anopheles_stephensi mirnest 100 100 -36.3 .......(((..((((((.((((((((...((...(((.(((((((((((((.((...)).))))))))))))))))...)).)))))...)))..))))))..))).... (-36.3)