mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CGCGCCGGGCCCGGGGCTTCT AAGCCCCCATCCCCGGCGCCGCT TGTGGCGTACGGAAGCCCCCATCCCCGGCGCCGCTCTCGGGGGGCCCAAGTCCTTGTGATCGAGGCCCAGCCCGCGGACGGTGTGAGGCCGGTAGCGGCCCCCCGGCGCGCCGGGCCCGGGGCTTCTCGGAGTCGG TTTATTTTGACTGATAGTGACCTGTTCGTTGCACAAATTGATGAGCAATGCTTCTTTTATAATGCCAACTTTGTACAAAAAAGTTGGAGCATATTAGTCAGCGGAGGAAAAGAAACTAACGAGGATTCCCTCAGTAACGGCGAGTGAAGAGGGAAGAGCCCAGCGCCGAATCCCCGCCCCGCGGTGGGGCGCGGGAGGTGTGGCGTACGGAAGCCCCCATCCCCGGCGCCGCTCTCGGGGGGCCCAAGTCCTTGTGATCGAGGCCCAGCCCGCGGACGGTGTGAGGCCGGTAGCGGCCCCCCGGCGCGCCGGGCCCGGGGCTTCTCGGAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAATACCGGCACGAGACCGATAGCCAACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAGAGAGAGTTCAAGAGGGCGTGAAACCGTTAAGAGGTAAACGGGTGGGGTCCGCG 4 2 3' arm Meleagris_gallopavo mirnest SSU_rRNA_eukarya 3e-48 mmu-mir-5105 8e-24 -66 ..((((...((((((((((....((((((((.((...(((((((((.........((.(((..((((..(((((....))).))..))))))).)))))))))))))))))))))...)))))))).))..)))). (-66)