mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure ATATATATACACACATACACA TGTTTAGTGTATATATTTAT GCTAGATATCTGTGTTTAGTGTATATATTTATATATGTATATATATACACACATACACACATTATCAT ATTTTTCAGTATAAATCAACTTTATTTATGATTCATTTTTAGCTAGATATCTGTGTTTAGTGTATATATTTATATATGTATATATATACACACATACACACATTATCATACACACGCACACGCACACGCGCGCACACACACACACACACACACACACACACACACACACACAG 4 1 3' arm Lipochromis_sp._matumbi_hunter mirnest 100 100 -18.5 ....((((..(((((...((((((((((.(((....))).))))))))))....)))))...)))).. (-18.5)