mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCTTTGGTGTTCTTGCTGTAG ACAGAAAACACAAAAGACA CACTGTTCTTGTCTTTGGTGTTCTTGCTGTAGAGATCTACAGAAAACACAAAAGACAGATTCAGG GTTGAAAATCAACAACTTGAGAGCATGGAGCGAGCACGGCTGCTGTCGCACTGCTGGGCTTTGTTGTTTCTCCACTCCTCCCTGACTGCTGCTGCAGACCTCGTAAACATCACAGCTGAATCTGGACAGAACGTCACTTTGTCATGCAGAGCCAACAACAACAACCTCGTCACATTTCTTGAGTGGAGCAAACATGGTCTTAGGAAAGGATATTTACTTTTGTACCGGGATGAGCGGTTTGATCTAGAGAACCAGCATCCATCGTTTAAGAACCGAGTGGAGCTACAGGACAGACAGATGAAGGATGGAGATGTGGCGTTGATACTGAAGGATGTGACACTTGATGACCGCGGAAGTTATGAGTGTCGTGTTGAGACAAAAATGAACCGCAAAAAGAGAGCGAATCAGGATGACGACCCCGTCATCATCATCAGCCTGAATGTTGTTCCTCCAGGGCAGCCGGGAGGTGACGAGGAGGATGGAGGGAAGAAGGGGCAAAGAAGTCGTAACAGTATTCTCATTGTGGCAGTTCCCACTGTTCTTGTCTTTGGTGTTCTTGCTGTAGAGATCTACAGAAAACACAAAAGACAGATTCAGGGTCCAGATGACTACCAGCCTCCTTCTGAAGTGATGACTATTTGAAATGTCTCAGATTCTGCAGCTTCTACAGTGTCCTGATGATGCTTCAAATCCTCTCATCAACTGTGTGT 3 2 5' arm Lipochromis_sp._matumbi_hunter mirnest 100 100 -22.5 ..(((.(((.((((((.(((((....((((((....))))))..))))).)))))))))..))). (-22.5)