mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CACATGTTGTTTACATGTGTT CACACACGTGAATCACATGTGAA TCATATGACCTCAATATTGATCACATGTTGTTTACATGTGTTTGGTAAACACAATCACACACGTGAATCACATGTGAATAAATGAGATTGGATCCT GGGCACCATATGAATGAAAAGTAATCACTTCTGCTGGGAAACTGAAGCCATGACACAGCTTCCATAATTCCTTCACCACAAGCCTGCATGCGTCAGTGCCAGAGAAATTCCGTAGCCAATAAAGCGCCCGTAAGGAAATGGATGTGAAATCAGTTTAGTTTAAAACAAAATCCCTGCAATACTGTGCTTTATCACTATTCTGTTGGGAGAAAATGCAAAGAAGAAGTAGGTGTAGGGCTTTGTTCCACACCATAGGGTAACCAATAGGGACAGAAAGAGAAGGTTTGGGACACATGGGTTTATGTGGATCATATGACCTCAATATTGATCACATGTTGTTTACATGTGTTTGGTAAACACAATCACACACGTGAATCACATGTGAATAAATGAGATTGGATCCTAAAGTCATGAGAGCTGCTTGAAACTCCATGTGTGAAATCAGTAGGGAAACCTTAAACCACGTAAGTTTTTCTGGAAGATCACAGTGAAGATTCCTGGCTGTTACAAAAAAGGATCTCATCTCTAGTTCCTGCTCAGCATTTGCACTGTGTCTGCAACAGAAATGTGACATGAAGCACCAGAGAAATCAACATAGACATCACCTGACCCCTCTCCCACCTACAGAAAGGCCAAGAAAATGCATTGCTCACTTGTTCTCACAACTGCAGCCAGGCAAACATGCCCACCTACTGNCCACCCAAGTTCTATCCATTTTTTGTCTCGGGGCTCTTTTGCACCTACTGTAAACAAGCTGAGCTGCCCAGCTGCTGCATGAGCATCCCCCCTCCCTTTTTCTGGGGGTGCCCATGGTCCAGGAATGAGGCAGGGCAGGCAGGGTTGATCACCAGCCCGGCTTCTCCATCCTGTCCATGGGNGGC 2 2 5' arm Lonchura_striata_domestica mirnest 100 100 -26.7 ......((.((((...(((.((((((((.((((((.((((((((.......)))..))))).)))))).)))))))).))).)))).))....... (-26.7)