mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGGAAACAGGGACCCTTTTTG AACAGGGTACCCTTTTCCAGA TTTACCAGATGGGCTGGTGATGAACAGGGTACCCTTTTCCAGANATAATTTTGCCTTCNCCTAAATACGTCANATTTNGACTANTGGCCCTCNGCAGCTGGGCCAGNATNCCAANAAATGCTTGGAAACAGGGACCCTTTTTGCCCCCCCCCAANCTGGTTC GGGGGGCTGACCCAAACCAGAGAGATGGGCTGGGCAATACTCCCTTACACTTGGCTGCCTGCACGAACCACGTTCCTGTCATCACCACGCTGCTGCGCGGAGGGGCCAGAGTTGATGCCTTGGATCGAGCTGGCAGAACTCCACTGCACCTCGCTAAATCAAAGCTGAATATCCTGCAGGAAGGATTCTCCCACAGCCTGGAGGCTGTACGCCTTGAAGTGAAACAGATTATCCAGATGTTGCGGGAATACCTGGACCGTCTGGGGAGGCATGAGCAGAAGGAACAGCTGGATGACCTCTGCTCCAGGCTACAGATGACTAGCACAAAGGAGCAGGTGGATGAGGTTACAGACCTCCTGGCCAGCTTCACATCGCTCAGCCTGCAGATGCAGAAGATGGACAACAGGTAATGGGCTGCCAAATCATCTTCCTGAAGCAGCAGAAGAAACCTTAGAGAGGAAAGGAAGCTGAAGTTTGCTTCTCAGATCACTGACTAAACATTGCTGCCAGCAGCCATTCCTGCCCAGACTGACTCTCCAGTGGTGCTCAGACTGTTCCTGGGGAAGGCAGCAGGCTTTTGCACAACAAAGGCAACAGACAAGAATGCTGCAGCTGTGACTTTGGGGNTAAAAGAGCTGCTCTACGTTTTACCAGATGGGCTGGTGATGAACAGGGTACCCTTTTCCAGANATAATTTTGCCTTCNCCTAAATACGTCANATTTNGACTANTGGCCCTCNGCAGCTGGGCCAGNATNCCAANAAATGCTTGGAAACAGGGACCCTTTTTGCCCCCCCCCAANCTGGTTCCNTTNGCNTGAAGGGAAAAACCNNGAA 1 2 3' arm Lonchura_striata_domestica mirnest 100 100 -37.8 ...(((((.((((..((...((((.(((((.(((((((((((..((..((.((..((......))...(((.......)))...((((((.........))))))......))..))))..))))))).))))))))).))))..))..))))..))))).. (-37.8)