mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CGGGTCGGCGCTCCACGCGGC GCTTGGGGCCAGACCCGGA ATCATCTGGACCGGGTCGGCGCTCCACGCGGCCGTCAACTTCGGGCAGTACCCCTACTCGGGCTACCACCCCAACAAGCCCTTCGGTAAGCCCGAGGCCCAATGCCGGTGCAGGGGAACGAGGAGTACGCGGGGCTTGGGGCCAGACCCGGAGAAGGGGC AAGCTGCTGCGACGCGCGCACTACCGCGACACCATGAACATCAACGCGCGGGCGCGCGGGCTGCTCATCAACGCCGGCGGCGTCATCGAGATGACCGTGTTCCCGCACAAGCACGCCATGCCCATGTCCTCCATGGTCTACAAGCACTGGAACTTCACCGAACAAGCTCTCCCCGCCGATCTAATCAAGAGGGGCATGGCGGTGGAGGACGCATCNAGCCCGCACAAGGTGCGGCTGCTGATCAAGGACTACCCGTACGCGACGGACGGGCTGGCCGTGTGGGACGCCATCGAGCAGTGGGTGTCGGACTACCTGACCATCTACTACCCCAACGACGGCGTGCTGCAGGGCGACGTGGAGCTGCAGGCGTGGTGGAAGGAGGTGAGGGAGGTCNGGCACGGCGACCTCAAGGACGCGGCGTGGTGGCCAAAGATGCAGACGGTGGCGGAGCTGATCAAGGCGTGCGCCACCATCATCTGGACCGGGTCGGCGCTCCACGCGGCCGTCAACTTCGGGCAGTACCCCTACTCGGGCTACCACCCCAACAAGCCCTTCGGTAAGCCCGAGGCCCAATGCCGGTGCAGGGGAACGAGGAGTACGCGGGGCTTGGGGCCAGACCCGGAGAAGGGGCTGCTACCGGACCATTAACGAACCAAGTCCATGGCCCTGGGGGGGATTTGGGGTCTGGGGGAACCCTTCACAGGGAATCTCTCGAAGAGGTCTATCTGTGGGGGTGCAGGACGCCCCGGCCGGTGAGCCTAGCACCGCCAGGCCGCTTGGGGGGGTTCCAAGGGCGCGGGGGGAGTAGTGGGGGGCGGAGGTGAGGGCGGGGGGGGGGCGGTAGGGTGGGCTCCTGGTTATGTGAAAAGTCTAGTN 5 1 5' arm Hordeum_vulgare mirnest 100 100 -61.5 .((.(((...(((((((...((((((.((..((((..(((((.....((.((((..(((((((((((.................))).))))))))((((......)).)).)))).))..)))))..)))).)).))))))..)))))))))).))... (-61.5)