mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TATTGAGAACATTTTGCAAAT TTGCAAACTTCTCAAAACA TTCCAGGACTTTATTGAGAACATTTTGCAAATTAGATTTTACAGTTTAACATTTTACAATTAGAAATTTCATCTGCTACTACATAAGTTGCAAACTTCTCAAAACACTACAGAA CATTTCCAGGACTTTATTGAGAACATTTTGCAAATTAGATTTTACAGTTTAACATTTTACAATTAGAAATTTCATCTGCTACTACATAAGTTGCAAACTTCTCAAAACACTACAGAAAATCCTTTATTTCTTTGAATTTTTCTGTTCCACGCTGAGCTCCTGAGATATATTTTTTCTTTCAGCTTCATTTTCATCTTCCTTAGAAGATGAAGAATCACACTCCTGACATATCCATCCATAGCCTGTTTGTTTAGGAGATTTTTTCAAAGGAGGATCCAAACAACCAAAATGGTAGCACAGTCTGCATTCATCACACCTGACAAGATTTTCATTGTCTCCAGTTCCCTTGCAAGTTGCACATTCAGTTCGTAAATCTTCAGCCTTGGGCTTCTTTTGTAACACAGACTGCCTCTGTCTTCTCTCTCTAGGAACTCTTTCCTCATGTTTTTCTTCCTCAGGAATGAAGCTTCGTTTTCGTCCTCTGGTTCTCGTGTTTCTTATTGGAATCTTCTTGGGTTCTGGAGGCATATCCTGTGGAACAAATTTCACTGGTTCCTTAATCTGCCTCCTTGATCGTTTGGTCCCATCTGGTAAGGTTTCCATGGCCATCTCTGCTTCCATGTCACTGCTCCCTGCCTGGTCACATTCAGAACACTGCCAATAACTGTTCTTGGTCTTTCTTGGCATCCTCGTAAGAGGAGGGTCCAGACATCCAAGATGGTAATGCAGTTTACAGGTTTCACACAATAAAAGAAGATGCTGATCATGGTTCTTCTTACAAATTCCACAACTATAAAGTACTGCAGGAAGAGTAGACGCCTTTT 4 2 5' arm Bos_sp. mirnest 100 100 -15.4 .............(((((((...(((((((.(((.......(((......(((((.......))))).....)))........))).))))))).)))))))............ (-15.4)