mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TATTGTATTGTTTTCTTTTTT AAAGATGATTCTACAATATT CTGTACTTCTGTAAAGATGATTCTACAATATTGTTCTTATATTGTATTGTTTTCTTTTTTAATAATATA GGGCAATACAAATGCAGTGGCAGCATTGTAGCGGAGAGGAGCGACACTCGTATGTAGAAACTTGTAGTTATTCGACTGATGGTTTCTACAAGATGGCTGACAAGGTTTCTACAGACGAATTGTTAGCGGCCCGAGCACACGGCAGGTCTTACTAGAACTCAACTGTTTGATACTCGGTTTGGGTTTCTTGCAACTATGATACGAATGATTTGGTAAAACGTATCAATTTATAGAAACCAGTAATGATATACCTAAAGATAGCTTATCTTCATCTGGCACATCTGTAAAACATAACGATAGGTATTATCATATCATCCGTTCATGGTACTGCCGTGTGAGGAGCCGTCGTGAGCGTGTGTGCGCTATTCGCGTCGCCTCGAATGCGTAGCTCGCTTCAAACTCGACTCGAAACTCGATCAGGCGAATTTTGACCGACTTCGAGCCGAGTTTGGGTGCTACGGTACCGCTGTACTTCTGTAAAGATGATTCTACAATATTGTTCTTATATTGTATTGTTTTCTTTTTTAATAATATATTGTGTTTAAACAG 5 0 3' arm Ostrinia_nubilalis mirnest 100 100 -10.3 .........((.(((((.(((..((((((((.......))))))))..))).)))))..))........ (-10.3)