mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGGGGGCGGNGGGGGGGGGGG CTCTTCCCCAGATGATCCCCAGC TCTGAGCTTAGCCTCTTCCCCAGATGATCCCCAGCACAGGCTTCAATCAATTTGAAAGGAACAGTGTGAAAATGAATCTACGTGATCACACTTCTTTATTGGGGGCGGNGGGGGGGGGGGGAGGANNNA GAAAACCCCACTTGCCCCCTCCTACTTACAACTCTGGTCAAACTCCTGTCTTTCACCTTGAGGAGCTCCCCACTGAAAGCTGAACCCTGGGCTCCTCTATTCGGAAAATGCCTGCATTGAACAGTCCAACTTCAGAGCCCATTCTGCAGATAATACATTTTTAGGGAGGCCTTATCTGAACCCACTAACAAATTCATGTTTGTTCTGCATTCCCTAGCATCTATGGCTCCTTCCAGGAAGCGGGACATCGCCGCAGGAGCTTTCAGGGCTCTGATCGCTGGTACTGTAGCCAGTTTCATGACAGCCTGTATTGCGGGCATGCTCTCCAGCCCTCCCATGGAGATAGATTGCGACAGTCTTTTAGAAAAAGCCTTCAACTCAACTTCACCTAGCAACACAACTGAGCTAGTTACCTGTTGCCAAAACATATTTACCAGTATTGTCGCCAGCAACGCCAGTGATATTTTGCCAGCAAGCTTATCCACCTTGAAAGGCTGCTGTCTGGTGCTGAATCAAACTACATTTAACTGTGATTGGGTCGCTACCTCATTCTGAGCTTAGCCTCTTCCCCAGATGATCCCCAGCACAGGCTTCAATCAATTTGAAAGGAACAGTGTGAAAATGAATCTACGTGATCACACTTCTTTATTGGGGGCGGNGGGGGGGGGGGGAGGANNNACTNTTGNGGGAGAAAATATAACCAGCTATTAATGACAATTT 3 2 3' arm Macropus_eugenii mirnest 100 100 -41.5 ......(((..((((((((((...((.((((((((....)).((((.....))))(((((..(((((((..(((......)))..))))))))))))..))))))))..)))))))))).)))...... (-41.5)