mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTCTGGCTGGGCTGGGGGCAG GACTCACACCAGTTAGTTCC CTGGGGGGGTCTTCTGGCTGGGCTGGGGGCAGTCACTCAGGGGGGTGTTTGACTCACACCAGTTAGTTCCCTGCCTCT CCAATAATTTTTTGGTTTTTAATATCAATTGATGTTTTAAAAAATACAGAGGTGTTTGACACAGAATAGCACCATTGTGTAGGACACAGTTCCTGCGCCCAGCACCTGGGGGGGTCTTCTGGCTGGGCTGGGGGCAGTCACTCAGGGGGGTGTTTGACTCACACCAGTTAGTTCCCTGCCTCTGCCTCGACCCAAAGGTCTTACAGGAAGACAATAAATAAATAGAACACCGAGATTTTATTTTGCAGTCTGCCCGGTTCAGGTCTCTCAGAAAGGGGGAAAATAGTCCGAACTGCGAGGGTTGGATGAATGGACGTCAGGTCAGGTTAGCCATTCAGTGCAGATCCTAGAGTGACTGGGATTGGAAAGTACTTGGGTCCTTTGGGTTCGCAATGGATTGTGTTGTTCTTGGGTTCGGGTTTTACAAGAAGCAGACGGGCCCTATGTCCACACCAAACTCCTGCTCGGGCCCTCCAATGTCCATAGGTGCAATGTCAATGATGGGAAGGCGTGAGGTCTTCTGTGACCGGTACTCGATGACAGTCTTGCCCTTCA 5 1 5' arm Peromyscus_polionotus_subgriseus mirnest 100 100 -30.9 ..((.((((....((((((((..((((..(((.(((((....))))).))).))))..))))))))..)))).))... (-30.9)