mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure ACCGATTTCAAATGGTGCTAG GAACACCAGGAGAAATCGGTCA CCTACATCATAACCGATTTCAAATGGTGCTAGACAAAAACAGACTCTGAACACCAGGAGAAATCGGTCAGCCTGTGT GAAACGACAGGCTGCTGCTGACATCACGAGGCTCTGAGACTGGTGCTTTTCCCCCTACATCATAACCGATTTCAAATGGTGCTAGACAAAAACAGACTCTGAACACCAGGAGAAATCGGTCAGCCTGTGTAAGAGATGGGCCAGTGGTGGTCTTCAGGTCTGAACCTCAAGGCAGACAAGTGACAAGTCTCATTTCAGCTGTGTTGCAACCATGGCTAAGTACTCCAGGCATCTTCCAGGTACAGGCAGGCAGTATTGATGTGGGTGAAGCAGTTCTCCATGTACGGAGCACTCTCCCTTTCCTGCTACAATCAACACCCAGAACATCATTGGACGATGATGAAAATTACAGGACCAGGACCAAGCCACCCTCCCCCTCCCATGGAATGCTGGATAAAGTGGATCACTCCCTGCCCCTGATCATGCCCTCGCATTTATTTTGAACACAACAACTTGCCCATTATCACTGCCTCTAAACCAAAGAGACTCATGAGCAAATTTCACTGTTCCAAGTCTTCCTTTGACTTCTTGAAGGAGAGAGCCAATCCTGTGTACAGCTGCTTCTCTGTAGCCTAACCTCTGCTGTGCTGCAATTCTTACTCCTAAAACACTGATTTCAAATGGTGCTAGATACAAAGATGGAAAAATCTAAGCCACCATGTGAAACCAGCTTCCAGAAGAAGAGGATCTCACTGAAGAAAGCAGAGAAGTGCAGTCAGAAC 4 1 5' arm Peromyscus_polionotus_subgriseus mirnest mir-29 5e-18 eca-mir-29c 2e-38 -19.8 ..((((.....(((((((((...(((((.((((...........))))..)))))...))))))))).....)))). (-19.8)