mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTTCTATCTGAACATTGTGTT CACTGTGTTAGGGTACGTAATA AATATCACTGTGTTAGGGTACGTAATAATAAATTTATTTCTATCTGAACATTGTGTTAT GTGGCGAACAACCGGCGGCAAATGTTAGACCTTAGCTGTGGGAGGAAGATTCAGGCCCGGACCCAGACGATCTGCTCGATCAAGGCTACACCGATTCGAACGGCGAGTTCCAGCTTCAGGGTGCAACTGTGGAAACGACACCAATCGACCCCATTCTGAAGGTGTATCACGAATGCAATGACGTCACAGGCTTCCTAGGGGTTCCGAAGCCTGGCAGCCGAAAGGTGAAATTCTCCCTGCCTGACAAGTACATCACTGACGGAATGGTTCCCCAGAAGACGATCAACATCGGAACGATTAACTTGGAAGTCGAATTCATGGACGAGGGACGAGAATACATCGTTGACTAGAAAGCGCTCTACCATCAGCCTAGATCTTACCTACTGATCTTACTGAAACTTACTGATCTACTTAAACCGCATTCTCTTCTCTTCAGGGATCACGGCCAGTGAGCTGCTTAAACAAATTTGTTAGTTATTTAGAAAAGTAACACCCACTTCCCTGTTTCCTATTCTTCATTATTTTGAAGCAATCATAACCCATTCAACCGCTAAATACCTTTCAGACGATTGAGCAGATGGCTGGCCTTGATAATTGGTATTGTACAAATATCACTGTGTTAGGGTACGTAATAATAAATTTATTTCTATCTGAACATTGTGTTATTG 5 1 3' arm Nippostrongylus_brasiliensis mirnest 100 100 -12.6 .(((.(((.(((((.(((((...(((((.....)))))..))))).))))).))).))) (-12.6)