mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GTTGTGTTTTTTATTATTTCC GAACAGTAGCAGACCTAACTT ACTAGATGAAGTTGTGTTTTTTATTATTTCCCATCACCATAAATCATATTTAATCACTGAACAGTAGCAGACCTAACTTCATCTGT ACTAGATGAAGTTGTGTTTTTTATTATTTCCCATCACCATAAATCATATTTAATCACTGAACAGTAGCAGACCTAACTTCATCTGTTCCTGACTCTGGATAGTGGATTAAAAAGACCATCAATCTCCAATGATATTAAAGTACTATTCTGAACATTACTGATATACTGAGTGGCAAGTCAAGATATCTGCTGGTTTTATTGTTTGGTCAACAGCACCACCTGCTGGACAGGTTTAATGTTGCTGGACTGAGCAGTATGGGAGGATGAAAGATGACACATTTAGGGCCGGTTTCCTGGACATCTACATTGAACATACTGTTTAGTCCAGGACTAGGATTCATCTGTGTCTGGGAAACCAGACCATATAGTTTAGTAGAAAGTAAGTGATACCAGCTTGTAGTGGGCTGACTAGTCCTGAATTGTCCTTTAGTTCCTGGACCATTTTCCATGCAGCTCCAGGTGACAGAGAACACATCAATTAGGACCGAGCCAACAAGCTGATCAATGATACTGAGGAGAATTACATACAGACAGAGAACCAACTGAGAAAACATATCAATGGTTCTGAATGACAACCAATATACATCAACACCAGACATCATGATTCATGGAAATGTACAAGATTAAAACATTGTATTGAATTTTAATTAATAACAAATCAGTTTACAGTTTAACCAGCTCAGCAGTACCATTATAACTATAGAGACT 5 0 5' arm Oncorhynchus_tshawytscha mirnest 100 100 -17.6 ..((((((((((((.((((.(((((.(((.............................))).))))).)))).)))))))))))). (-17.6)