mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AATGCTGCTGCTGCTGCTCTG TGCTGAGTGGAAGCAGAAGTATGAG TGGAGAGATCTAATGCTGCTGCTGCTGCTCTGGACAAGAAGCAAAGAAACTTTGACAAGGTCCTTGCTGAGTGGAAGCAGAAGTATGAGGAGTCTCA GACTTCACAATGCAAAAAGCAAAGTTTCAAACTGAAAATGGTGAGCTCACCAGGCAGCTAGAAGAGAAGAACTCTTTGGTGTCCCAGCTGACCAGAGCGAAGCTCTCATATACCCAGCAGATTGAAGACCTCAAGAGGCAGCTGGAGGAGGAAGTCAAGGCCAAGAATGCACTTGCCCATGCAGTGCAGTCTGCTCGCCATGACTGTGATTTGCTGAGGGAGCAGTTTGAGGAAGAGCAGGAAGCCAAAGCTGAGCTCCAACGCAGCATGTCCAAGGCCAACTCTGAGGTGGCTCAGTGGAGAACCAAGTATGAAACTGATGCCATCCAAAGGACAGAGGAGCTGGAAGAAGCAAAGAAAAAGCTAGCTCAACGGTTACAGGATGCTGAGGAAGCTGTGGAAGCTGCTAATGCAAAATGCTCCTCCCTGGAGAAAACCAAACACAGGCTTCAGGGTGAAATCGAGGATCTGATGGTGGATGTGGAGAGATCTAATGCTGCTGCTGCTGCTCTGGACAAGAAGCAAAGAAACTTTGACAAGGTCCTTGCTGAGTGGAAGCAGAAGTATGAGGAGTCTCAAGCTGGGCTGGAA 4 0 5' arm Ptyochromis_sp._redtail_sheller mirnest 100 100 -33.9 ..((((..(((.(((((.(((((.((((((.((((......(((((...))))).....)))).....)))))).))))).))))).)))..)))). (-33.9)