mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTTTGGAACGGAGGGAGTATA TACTCCCTCTGTCCCAAAATA TATAAAGATATACTCCCTCTGTCCCAAAATAAGTGACGCAAATTTAGTATTAAGTTAGTACAAATTTTATAGTAAAGCAGCGACACTTATTTTGGAACGGAGGGAGTATATAGCAAT TCGGCACACTCATGCTGATGAGTACTGCCTTCATCTGGCACAATTGCTTCAGGCAATTGCGTATAAAGATATACTCCCTCTGTCCCAAAATAAGTGACGCAAATTTAGTATTAAGTTAGTACAAATTTTATAGTAAAGCAGCGACACTTATTTTGGAACGGAGGGAGTATATAGCAATAA 1 0 3' arm Hordeum_vulgare mirnest MIR1122 1e-31 osa-MIR1862d 0.00002 -46.8 .......(((((((((((((((.((((((((((((.(((...((((.(((.(((((......))))).))).))))...))).)))))))))))).)))))))))))))))...... (-46.8)