mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CTTTGGAGGGAGAAAGTGGGA CCTTTTTCTTCTTACAATATT ACATATCTCATTCCTTTTTCTTCTTACAATATTCCTTTCGCTTTGGAGGGAGAAAGTGGGATGAACTAGT GGGGACCGAAAATGAACAGCCGGGCCTATCTCCGATCCCCCCACAACACATCTAGCTCGGAACATATCTCATTCCTTTTTCTTCTTACAATATTCCTTTCGCTTTGGAGGGAGAAAGTGGGATGAACTAGTCCTTTCCTTCGAAGGGCTGGGCATGTTTTGGGCTGTTCTTCTGCAGGCATCCTTCTTGAAGCTCGGCTTGTTTGATCTTCACCTCCTTGTTACAGGATCCCTGTGTCTATATAATT 4 0 3' arm Frankliniella_occidentalis mirnest 100 100 -18.8 .......(((((((.((((((((((.(((.............))).)))))))))).)))))))...... (-18.8)