mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTTTGGAACGAAGTGAGTATA TACTCCCTCCGTTCCAAAAGT CATCAATAATACATACTCCCTCCGTTCCAAAAGTTATTACGATGCCGCGCTTACTTATTTTGGAACGAAGTGAGTATATAATAGTAGG CATCAATAATACATACTCCCTCCGTTCCAAAAGTTATTACGATGCCGCGCTTACTTATTTTGGAACGAAGTGAGTATATAATAGTAGGGTCTACGTATATTTATCAACTTATTATAGCAAAACATTCGCACACAAAAACTTATAGCAGTACACATACAAATACCCTGAGGTCCCGAACCCCGAAAGGCTCACACAAGATACAAATAAGAAAAGGAGGCCTAAAGGTCACATTTCTCGCTTCTTCAGCTTCACCATGAGCCCATTTTTCATGTGCAGTACACAGGACATCTCGGGCTGGACCTTGAGCCCGTCAACCAGCTCCACATCGAAGTTCCACACCATTGCCGCGACAATAGTATT 3 0 3' arm Hordeum_vulgare mirnest MIR1122 0.0003 100 -20.6 ......((.((.((((((.((.((((((((((.......((......))........)))))))))).)).)))))).)).))..... (-20.6)