mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GGTGCTGCTGCTGCTGCTGTT GGGCGGATTGCAGGTGGCACCAG TGGCACAGACGTGTCCTGCCAAGGGCGGATTGCAGGTGGCACCAGCCTGCCCATGATTCTGGGAATACTGGGAGGCATCCTGTTGCTGCTCATGCTGGTGCTGCTGCTGCTGCTGTTTGCGAGACGAAGAGGAGGA CTAAATTTGGCCACAGACCTGGATATCGGAGTGTACAATGTGGTCCTGAGGGTCGCAGACAACCAGGGCCTGTCGCAGGACAACACCGTCCAGACCAAAGTGTGTGACTGCACTGGCACAGACGTGTCCTGCCAAGGGCGGATTGCAGGTGGCACCAGCCTGCCCATGATTCTGGGAATACTGGGAGGCATCCTGTTGCTGCTCATGCTGGTGCTGCTGCTGCTGCTGTTTGCGAGACGAAGAGGAGGAGAAAAGAAGGAGCCTCTGCTGCAGGACGACGATATCAGAGACAACATCTACTACTATGACGAAGAGGGAGGCGGCGAGGACGATCAGGACTATGACCTGAGTGTTCTCCACCGTGGTCTGGACAACCGGCCCGACGTGTTCAGGAACGACGTGTTGCCCAACTTCATGCCGGCTCCTCAGTACCGGCCTCGTCCCGCCAATCCAGACGAGATCGGCAACTTCATCGATGATAACCTGAAGGCAGCCGACAACGACCCGACAGCGCCCCCCTACGACTCCCTGCTGGTGTTCGACTACGAGGGCGGCGGCTCCGACGCAGCAGCCTCTCCTCTCTGAACTCGTCGAGCAGCGGGGACCAGACTACGACTGCCTCGGCGACTGGGGACCCCGCTTCAAGAAACTGGCGACATGTACGGCGGCGGCGAGACGACGACATGCTGTAAACGTAC 3 2 3' arm Psetta_maxima mirnest 100 100 -48.3 .(((((....))))).(((.((.(((((...((((.((((((((((.((((((..((((...))))..)))).((((......))))...)).))))))))))))))..))))).)).)))............... (-48.3)