mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCATATTCCTTCTTTTTCCCA AAAGAAATAAGGAAAATGAAG TTATAATAAATATTTTCCTTTTCATATTCCTTCTTTTTCCCAATCCAAAAGATTCAAAGAAATAAGGAAAATGAAGAGGGTAAAAAATACCGAA GTAAACAATTTAATTATAATAAATATTTTCCTTTTCATATTCCTTCTTTTTCCCAATCCAAAAGATTCAAAGAAATAAGGAAAATGAAGAGGGTAAAAAATACCGAAATACCGAAAAATACCGCGGTATTTTTGGATTGATCGGTACGGTTCGGTATTTCGGTAAATACCGAAAATAAAACCGAAAATAATACC 5 0 5' arm Meloidogyne_chitwoodi mirnest 100 100 -22.2 ............((.((((((((((.((((((.(((((...((((.....))))...))))).)))))).)))))))))).))........... (-22.2)