mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GCTGCTGCTGCTGTTGCTCTT GGGCGACGGTGGAGGCAGCAC ATCGACGACGGCGGGCGACGGTGGAGGCAGCACAAAAGCGATGTGCATGAAACGCCGCTGCTGCTGCTGCTGTTGCTCTTGTTGCTGTT AGGCGGCCGACATGTTTCCCTCCCTAGAGTTTTTTTTTTTTTTGAGTTGATCAAAGTTTTCTTTTTGGGGGCGTGTTTACGCACAAAATATGTAAAGACAAACAAATTAATATGTAATCTGATGAAACAAAAAAAGAATAGTAAATTTTTTTTAAAACTGGCAGAAATATGTAAAAATTCCATGAAAAAGAGGGTGGCGGCGGCGGCGGGCGTATTTTCGGATTTTTTCGCAACAAAAAAACTCTCTTCAGCCGTTTGGCACACTTCCACCGTTCTGTTTGCCCGCAGGTGCCAGCATAGCGCGCGGCACCGGCGGCGGCGGCACATCGACGACGGCGGGCGACGGTGGAGGCAGCACAAAAGCGATGTGCATGAAACGCCGCTGCTGCTGCTGCTGTTGCTCTTGTTGCTGTTGCTGTTGCTGAAGTTGTTGTTGTTGACGTTGCTGCCCCGGCCGTA 3 0 3' arm Globodera_rostochiensis mirnest mir-598 0.000005 dme-mir-4968 0.0003 -36.6 ..((.((((((.((((((((((((.(((((((.....(((.(((.......))).)))))))))).)))))))))))))))))).)).. (-36.6)