mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTGGTGAGGAGGGCGAGGGGG TCTCCGCTTTCCTCCAACCAGGA CACTACTTCTCTTCTCCGCTTTCCTCCAACCAGGAGGTGAGTGCGTTTGGTGAGGAGGGCGAGGGGGACCACCTGG ATAACTGTACTGGTCATTCACACTTTTTATTGAGCGCTTTCTTGTTGACATGTTTATTTGGGCTATCGCTCGGGACGGAGCTGAGCTTTGTGACTTGCGGCTCGGTTGTAAAGCTGTTAAATGTAAAGCACAATGTCAGACTGCACTCTCACGACGTGCGCTACGGCTCCGGCAGCGGACAGCAGTCAGTAACAGGCGTGACCACGGTGGAGGACAGTAACAGCTACTGGAGTGTACGGGGCACCAACGGGGCCCAGTGTCACCGGGGGACTCCTATTAAGTGTGGTCAGACCATCCGCCTCACACATGTCAACACTGGACGCAACCTGCACAGCCACTACTTCTCTTCTCCGCTTTCCTCCAACCAGGAGGTGAGTGCGTTTGGTGAGGAGGGCGAGGGGGACCACCTGGATGAGTGGACGGTGCAGTGTGGAGGGGCGGTGTGGCAGCGCGAGGAGGCTGTCCGCTTCCAGCACGCCTCCACCGATGCGTTGCTATCGATTACGGGGGAGCAGTACGGCCGGCCCATCCACGGGCAGAGGGAAGTACACGCCATGATGGGCCCCAGCCAGCACAGCCTGTGGAGGGCCATGGAGGGGGTTTATATGAAGCCCAGTGAAAGCCCACTAGGGAACAAGGACTACAGCCACCCTCTACACACAGAGTTCTGATTCAATCGGACTACAGCCATGCTCTACACACAGACTGACTACAGCCATCCTCTCCACACAGACTGACTACAGCCATCCTCTACGCACAGACTGACTACAGCCACCCTCTACGCACAGACTGACTACAGCCACCCTCTACGCACAGACTGACTAC 1 2 3' arm Oncorhynchus_nerka mirnest 100 100 -27.1 .........((((((.((((((((((..((((((..((....)).)))))))))))))))).))))))........ (-27.1)