mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GCTGCTGCTGCTGATGGTCTC GAGCTTTTCTTCAGTGGCAGTGT ACCACAATGTCGCTGCTGCTGCTGATGGTCTCATCAATGAACTTGAGGAGTACATTACCGAGAGCTTTTCTTCAGTGGCAGTGTTGGAGGGT CTCAGAGCAACACTGAGAGCATCGCCCAGTTCATCCAGAGGCTCTCCGAGACCAGCAACATCTTCACACCCGGCACAGGGGACGCCATGGGTTTCTTTGGAGATCTACTGACCCTAGTGTGTCAGAACTTCTCCATGGTGGACCTGGTCTTGCTGCTCCACGGACAGAACCAGCCCCTGGGCCGCATCCAGACCCAGCTGTCTCAGTTCTTCACCCAGCATTACCTCAACGGGAGCGAGCCCACCGACCACAATGTCGCTGCTGCTGCTGATGGTCTCATCAATGAACTTGAGGAGTACATTACCGAGAGCTTTTCTTCAGTGGCAGTGTTGGAGGGTGTCAACGTCACTCAGACCAACCTGTCCTTCTTCAGGCGGCAGTTAACGCGTATCGCCACACACATACTCCGCTGCACAGACAACACATTTGGGCCGCAGCTGCTGCAGATGTGCAACCAGGGGCTGTTTGAGTGTCTGGCCCTCAACCTGTACTGTCTGAGAGGAGAGCAGAGTGCCCTCACTTCTGTCATCAACCACCGCATAAGGACGTTGTCGACTGACATGAACCCCAGCCTGGTGAACTGGCTGACCAGTATGATGACCATGAGGCTGCAGGTCATCCTGGAGCACATCCCCGTCACAGAGGACCAGATACTGCATTATGCCGTCCACACACAGCAGGGGGAGGCTTCTAATGCACAGGAGCCTCAACGTGCCCAGATCATAGAGATGGAGGACACTCACTCCCCAGCCCCGGCCACCACAGCTGAGGAAGCCATGGCGTCGTCACAGGAGACTAGGGCAGAGCCTAGGGAAACTGGAGCCACCGGAGGGGCTGCGCCATTGGGTGGCGCCATGGCAGCAGCTGAAGCCAGCGGGAGGGAGGAGCCTG 3 2 5' arm Oncorhynchus_nerka mirnest 100 100 -28.8 (((.(((...(((((((((((..((.((((((...((((.((((...)))).))))...)))).))..))..))))))))))))))...))) (-28.8)