mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGGAAGGCCTGGCTGGGCAGA TGCCCAACGAGTCTCTAAA ACAAATCAGATTTGCCCAACGAGTCTCTAAATTGCAGTGGAAGGCCTGGCTGGGCAGAAGTCCATAT GAGTGTCAAAACAAAAGAAGGTAAACCCTTTATTTTCTTCTCAGTATACATCACATAATCAACAAAAAAAGAACATTCTACAGTACTTTAAAAAAAGGAGTTTAGAAAACAATAATTATACAAATCAGATTTGCCCAACGAGTCTCTAAATTGCAGTGGAAGGCCTGGCTGGGCAGAAGTCCATATTAAAAAAGACACAAAACAAGAGAAAGCAGATAAAAACAATATGCTGATAACCAGCTTCTTATGTTTGTGACCAAACAGTAGACGCATTGATCAAAGTATTAAAGACTAAACGTGAAAACACACATGGAGAACGGTCAGCGCTGCTTTTAGAGCATCTGTACAGTCGCTCCTTTCAAGGCAAAGCCAGAATTTTCCTGGATGTGTGGCGCCACTGGCCTTTGGCCACAGGAGGAGTGGGTGTCAGTAGAAGCCCCTCTCCAATGTAAGGTCCACTGGTGATAAGTAAAACCTAGCTCCAGCTCCTATGGTGCTGCTTTGTGGAAGGTCAAGGGTCGATCTCCATGGGAACAACCGTTAGGATGGCGTCCTCATTTCCACGGCGCACAACTACTCTCAAGGTGCCGTCCTGCTTGATGGCAGCAGTGACGTCATTCGCTGATGAGATCCTTTGGCCGTTGATCGAGATGATGACGTCATGTTCTTTCAGCCCAGCAGTTGCAGCTGGTGTCTTTGCGATGACCTCCATAACGTAAGCTCCAGAGGTGATGTCAGGGAAATCACGATGTCGAGTCTTCAGCTCTTTGGCCAGCGTTGGAGTGAGAGTCATCATCCTCACACCGATATACTTCTTCTTAGCAGCCATTCTCCCTCTGGACAGCCTGTCGTAGGACTCTGTCAAGAACTCTCGAATTTTATCCGAGG 2 2 3' arm Sebastes_rastrelliger mirnest 100 100 -17.1 ..........((((((((.((.(((((((........))).)))).))..))))))))......... (-17.1)