mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TACGTCGTCGTCGTCGTCGTC CGGCGGAACGACGTCAGTAAA AAGCAAAGGCGACGGCGGAACGACGTCAGTAAAAAACGGTGGGCGCAAAATGACACGATATTCTCACAGTGGGCGCGATCGTGATCGGCATGCTTGGGCGCCGTCTTGCGGGGCGTGTCCCGGGTCTGGCCGCACGTGCACCAAGAGAAGAGCCGGTTCTACGTCGTCGTCGTCGTCGTCGTCGTCGTC GCCGGTTGCGATCTAGAACTAGTCCCGCGAACAAAAGACGACCCCGGGAAAGGCGGCTATTGGAAAATCAATCCAGAGTACGAGGACGCCTTTGAGAATGGCATTTTCAAGCGCAGGCGCCACTCAAACAGCGCCAAAAGCAAAGGCGACGGCGGAACGACGTCAGTAAAAAACGGTGGGCGCAAAATGACACGATATTCTCACAGTGGGCGCGATCGTGATCGGCATGCTTGGGCGCCGTCTTGCGGGGCGTGTCCCGGGTCTGGCCGCACGTGCACCAAGAGAAGAGCCGGTTCTACGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCACCTCTGCCGCTGCTGTCAGTTCCGACAGAAAAAAGTCGCAAAGGAGCAAGCGGAGGAAACAAAACCTGGGACGCCCTTAGCGCCTTCAAGGATGACTTCAGTTGGTCGTCACTGTAAGAAGACCAAAAAGTGCTGGATATCTCGCCCGATTGTATTGCCGGAGTCACGACCGGACATCGGTGGAACTCCATTGGAGCCATAAGTCCTCCCGCATCGGTTCACTCTGTGGATGGCTCAGAAAGATTGACGCAGTTCCCCGAATCC 3 2 3' arm Oscarella_carmela mirnest 100 100 -66.8 .......(((((((((((.((((((...(((.((..((((....................(((((....(((..((...((((...(((..((((((((((.((((....))))))).)))))))...))).)))).)).))).)))))..)))).)).)))..))))))..)))))))))))...... (-66.8)