mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTTGTTTTATTTTTTGTTTTT ATGCGAGAACAAACAAAAC TATGTTCTTTTGTTTTATTTTTTGTTTTTTTTATTGAATGCGAGAACAAACAAAACAACTG TATGTTCTTTTGTTTTATTTTTTGTTTTTTTTATTGAATGCGAGAACAAACAAAACAACTGTCTTTTATTTAAACCAGCAACTGACATAACATTGAATTACAAAATTGAGTTCATGAGTCCAGCTCGGACCATCATCCTAGATGGGCAATTTCACAATAAGACAAAATGCAAACACCAGAAAAGAAGCAACAATGACACTTCCAGCATCCGTTGGATTGACACTTCCAGGAGCAGGTGTCAAACATAACGGTGGCGGATCTGTTGGCTTTCGGCTCAAAAGTTTGTCGGAAGGGAGGCAAGACCGTAAGGAATAATCTCAGAATGTCCTTCTCCAAGACACGAGACGGCTTTGTCTTTCAAACTCATAAAATTTTCATATGCAGGCTTAGCCGCAAGAATACTCATATTAAGAGTATTTAATCCTTTAAGGATCTGAGAATTGCTTGATCCATAAGTAAGTAGCCCAACCCGTTTCTTGCAAAGTAGGAATAAATTAAAATAACAGTGAATTCACAGATAAGCCACCACTTTTACGTAAAATAAGGGTAAAAAAAGCATCTGACTGTTTACGTGGTTACAAAACTCAAACAAGGTGGAACTTTCCGGGCTGGGTACACAAGAACGTAGACAAGGCACATTTCATCTGAAGACGCTATGCCACCCTAAAGCAAT 2 2 5' arm Oscarella_carmela mirnest 100 100 -12.6 ...(((.((((((((...(((((((.(((......))).))))))).)))))))).))).. (-12.6)