mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AGGTTGTTTTTTTTTGTTTTT AAACAAAAAAATACAAAGACG GGACACCTACATACATGTGGGAGGTTGTTTTTTTTTGTTTTTATCCACTGCAAAAACCACAAAACAGAAACAAAACAAAAAAATACAAAGACGTGAATAATCCTTGCGCGC GCATTCAAAGAAAAACATATTTATTTGCATTACAAATCAAGCAAATTTGGTTAAAAGCCTTTACAATAGACATTTGGAAATGGAAGTTTATGCAGACACAGGAGTAGCACTGTATACTTTAAGAGGGAGGGACACCTACATACATGTGGGAGGTTGTTTTTTTTTGTTTTTATCCACTGCAAAAACCACAAAACAGAAACAAAACAAAAAAATACAAAGACGTGAATAATCCTTGCGCGCGTGACTCGTTTTAATCCCATTGAAAAACAATGAGCAACCCAATAATAATTTGGAGGTACATCGCAACGACGACAAAAGTATAACGTACGATATACTGTACGTATGTTTATGCACACAATCGTCTGACATCAAGAGTCAGGAATCGGGGGAAAGTGTTGCCTTGTGAAAGTGTCATTCCAGATGTTTTTATAAATAAAGAAGGGGGTAAAACACTTGTGTATAGCAGTGTATAAAAATATCTTGGTTTATAAATAAAACAGACGTTTTTAAGCATTCAAACATTACGGTTTTTAACGAATCCTACAAAGACATACTTAGCATTACAACCGTCTGTTACACTCTTGTCATTCATTCATTCTAAAACCATTGTATATTTATATACTGCTTATTAATTATAAATAACAAGCTTGAAGAGTTGTCGAGCCANTT 5 0 5' arm Solea_senegalensis mirnest 100 100 -21.3 .....((((((....))))))...((((.((((((((((((......(((..............)))....)))))))))))).))))...((((...........)))). (-21.3)