mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GCTGCTGCTGCTGCTGCTGCT AGGAAGAGAAGCGGCAGCAGGAG AGGAAGAAGATTCAGCAAGCGGAGGAAGAGAAGCGGCAGCAGGAGTTACTCGCGAAAAAGAAGCTGGAAGAGGAAGAACAGCGAGCTCGCAAACTGGCTGAAGCTCGCAAAGCACTGGAGCTGAAGAGGGAGCAGGAGCGAGAGCAGCAAGCTGCTGCTGCTGCTGCTGCTGCTGCTGAAAGGGAGAGAC GCTAAGACGGGTGTTTGAGGCCAAAGTAAAAGAAGAGCAGAGGGAGGAAGAAAAGAAAAAGAAGATTGAGCAGAAAATGGCACAGATTGACGAGAAAAATGATAAGCGACAGGCGGATGAGAAGGCCAAGCGGAAGGTGGCCCTGAAACGTCTGGAGGAGCTTGAGCAGAAGAAGAAGTTGGAAGAAGAGGCTCGGAGGAAGAAGATTCAGCAAGCGGAGGAAGAGAAGCGGCAGCAGGAGTTACTCGCGAAAAAGAAGCTGGAAGAGGAAGAACAGCGAGCTCGCAAACTGGCTGAAGCTCGCAAAGCACTGGAGCTGAAGAGGGAGCAGGAGCGAGAGCAGCAAGCTGCTGCTGCTGCTGCTGCTGCTGCTGAAAGGGAGAGACTTGAAAAAGAGAAAGCTTTCGCTCTGCAGCGTGAACTGGAGAAGGCAGCGAGAGAGAAGGAGAGGAGAGAACTGGAGGAGAAAAAAAGAGCACTTGAGGAAAAACGGAAACAGCAGGAGGAGGAGCTGAGGTTTGCTGCAGAGAAAGCTGCTAAGGAGAGAGAGGCAGCAAAGCAAAGAGAGGCTGCTGCTAAGAAACAGAAACCTGCTGCTGCCCTGAATGTGACTGTGGATATGGAGCAGTCTGTGATGAGAACACCAGTTGGAAAAGGTGGAGGGCTCAATGTGACTGTGGATATTGAGCAATCACCACAGTTGTACCTCGGCCGCGACCACGCTA 4 2 3' arm Solea_senegalensis mirnest 100 100 -60.2 ..........(((((((.((((.((.((...(((((((((((.((((....((((.......((((............))))....)))).)))).((((...(((((......(((...((......))..)))..)))))..))))...))))))))))).)).)).))))))))))).......... (-60.2)