mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TATTTCTTTACAGAGGGAGTA CTCCCTCCGTANACAATATA GCAATCCTATGTACTCCCTCCGTANACAATATAAGAGCGTTTAGATACTAAAGTAATGATCTANACACTCTTATATTTCTTTACAGAGGGAGTANCATATATAG CCCGGGCTGCAGGAATTCGGCACGAGGACAGCGGAGAAGGTTGGGAAAAATGAGGCGGGAACTTTCTGTTCTCTACAGCCGCTTTTATGGCATTCTTTTGGGAGGAATCCTTCTGATGTATGAGTTGCACAATTTCTTGCGCCTGCTTCTTTTCCTGATGTACTCCTTTTGGATTCCTCAAATTGTCATGAATGTCATCCGGGATACAAGAAAACCACTGCACCCTCAATATATTTTAGGCATGACTGCTATCCGTGTAGCCATCCCGCTATATATATTTGGTTGTCCTAGCAACTTCATGCGCATTGAGCCCGACAAGAAATGGTGCATAGCTGTGACAACGTTCATGGGTATCCAAGCAGCTGTGCTGCTCCTCCAGCACTATCTTGGTTCTCGCTGCTTTATTCCTCACCAGATCCTCCCTGAGAAATACTGCTACCACAGGAAGGTAGAGGATAACACAAATCAGCCCATTGATTGTGTAATCTGCATGACCACAATTGATCTTTCCCAAAGAGCAAGTGAATACATGGTGGCACCGTGTGAACATATATTCCACTCGGGCTGTTTACAACGCTGGATGGACATCAAGATGGAGTGCCCAACTTGCAGGCGCTCTCTACCACCAGCTTAGAGGAGCAATCCTATGTACTCCCTCCGTANACAATATAAGAGCGTTTAGATACTAAAGTAATGATCTANACACTCTTATATTTCTTTACAGAGGGAGTANCATATATAGTTTACAAGGAAGTANGTAGCCCAGCGAAAGTGCTTATATCCCCATCTTCCCATCCACATCCGTCGAGATTCTCAGATATTCTCGCCTCCCCATGTATACTTGGCCGTNTTAAATGGTTGGATTTTGAACCTGCT 5 1 3' arm Hordeum_vulgare mirnest MIR1122 1e-16 tae-MIR1121 0.00000000000002 -32.7 .......((((.((((((((.(((...((((((((((.((.(((((............))))).)).))))))))))....))).))))))))..))))..... (-32.7)