mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GTCCATGTTCAGGTGCCAATG ATGGCGGACTGAATGTGGACAC CTTCACCACTGGGTCTCATGAGTCCATGTTCAGGTGCCAATGGCCTTTATGGCGGACTGAATGTGGACACCTCTGGCCCCTTCCAAAT TGAGCTGTTCTTCTCACATTATCACACAAGATTTTGTAATTGTAAAGCTCATTGCACACAGCTGACAACTTGCTTCAGGAATGGCAAAGAGAGTGTTGATTGTGTATGCCACCCAAGGGCTGGGTTCCATCCATGCAGCAGCCAAAGATGCTGCTATAGAGGTCTTAACTGCTCAGGGCTGCACGGTGGAAGTTTCTGACCTTTACGCCATGAAGTTTAAAGCTTCTGCTACTGCAGAGGACATCACCGGAGAAATTAAGAATGCTAAACACTTCCGTTATGCAGAGGAGACAAAATCAGCATGGGAAGCAGGAAAACTATCTGCTGACATCACTGAAGAACAATGTAAACTCATGGCGGCAGACTTGATCATCTTTCAGTTCCCCATGTACTGGTTCACTGTTCCTGCAATCATGAAGGGCTGGATTGACCGAGTGTTCACACTGGGCTTTGCCTACTCTCAAGAGAAGCGATACACCCAAGGCATCTTCAAGGACAGAGAGCCATGCTGTCCTTCACCACTGGGTCTCATGAGTCCATGTTCAGGTGCCAATGGCCTTTATGGCGGACTGAATGTGGACACCTCTGGCCCCTTCCAAATGGCGTCCTGGCGCACTGCGGCTTCCCAGGGTGCTGGGCCCCCAATTTTTGGGGGGCCCGCCCANTTCTCTGAGGCGCGCCGCCTTGCGGTNGGCGGTCCGCGGCAGGTCGCCGTCGAAGGANACGCTCCTTCTCCGGACGGTGTGAAGTCCCCCAGCCGCACGCACCATGTGTGTCCGCGCCCCCCTCTGCCTTNTNACACATNTCC 4 1 5' arm Thunnus_thynnus mirnest 100 100 -29.3 ..........(((((....((((((((((((((.(((((..........)))))..))))))))))))...)).)))))......... (-29.3)