mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AGAGGCATAGGGCATGGGAAN TCCTATGCATATACCTCTTT CTGTTCCTTTTTCCTATGCATATACCTCTTTGAGATGTAACTTTACACAGAGGCATAGGGCATGGGAANATGGGGCT AGGAGAGACTCATCTGGAGCTTTACAGGTAAGTCCTCTACACGCCTGACTCATTTTATAAACTGATCTATTTAATTTAAACTAAGAAAATGTGATCCAAACATTGACTTTTTGAAAAAATTGATTATGAATGTTAAGTTTTATATTGAACAACAAAAGTTGTCTGCTTCTAGTTGAGAAGAAATCTCACCTATAGAAAAAAATATGTGATTTTTTTGTTGTGTTGTACATGCAGTCATGTATCTCAGTGGCTTTTTTTTATCCCTGCCCTCCAGGTTGCACGTGCAGCGGCAGGCAAGCAGGGCTCTTTGCACTCGCTGTTCCTTTTTCCTATGCATATACCTCTTTGAGATGTAACTTTACACAGAGGCATAGGGCATGGGAANATGGGGCTGCAGAGGTATTCCACCCGTCAGTCAGCCATTTCATCATCCTCTACCGGATGACAGCTGACCTCAAAGCGCGCACACACATGCACCCTGGGCTCCAGCTTCCTGGGCACGACAGAAGTGAACACTGACCGCAGTGATT 3 1 3' arm Thunnus_thynnus mirnest mir-202 3e-19 fru-mir-202 3e-19 -27.4 ....((((..(((((((((.(((.(((((.(((((......))).)).))))).)))..)))))))))...)))).. (-27.4)