mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GCACTGAGAAGGGAGTGGAGA TCCATTCTTTACCTCAGAGCAC GGGTCCATTCTTTACCTCAGAGCACATCAAACGCTGCACTGAGAAGGGAGTGGAGAGCATCTTTGACATCATGGAGATGGAGGACGAAGACAGAA GGGTCCATTCTTTACCTCAGAGCACATCAAACGCTGCACTGAGAAGGGAGTGGAGAGCATCTTTGACATCATGGAGATGGAGGACGAAGACAGAAGTGCTCTGCTGCAACTCTCAGATGCTCAGATTGCCGATGTTGCACGGTTCTGTAACCGCTATCCCAACATCGAGCTGTCGTACGAAGTGGCAGAAAAGGACAACATTAAAAGTGGGAGTCCGGTTCTGGTTCAGGTTCAGTTGGAGAGAGAGGAAGAGGTCACTGGACCTGTCATCGCTCCACTCTTCCCTCAGAAACGTGAGGAAGGCTGGTGGGTTGTGATTGGAGACCCTAAATCTAACAGTCTGATCTCCATCAAGAGATTGACATTGCAGCAGAAAGCAAAGGTGAAGCTGGACTTTGTCGCCCCGGTGATGGGTGTCCACAATTACACTCTGTACTTCATGAGTGACGCCTACATGGGCTGTGACCAGGAGTACAAGTTCAGTGTGGACGTGAAAGAGGACAGCGACTAT 4 1 3' arm Cynoglossus_semilaevis mirnest 100 100 -26.3 ...((((((((((..(((((.(((..........))).))))).)))))))))).....((((((.((((.....)))).....))))))..... (-26.3)